Package tools

import "github.com/TuftsBCB/tools"
Overview
Index
Subdirectories

Overview ▾

Package tools provides command line tools that utilize the various repositories in the github.com/TuftsBCB organization.

In most cases, command line tools are typically very small and only representative of an interface to interact with an existing library. In more exceptional circumstances where performance is needed, a command line tool may use concurrency in an attempt to decrease execution time.

Index ▾

Package files

doc.go tools.go

Subdirectories

Name      Synopsis
..
bestfrag      bestfrag computes the best structural FragBag fragment that corresponds to the region provided.
bow     
bow-dist     
buildhhm      Example buildhhm shows how to construct an HHM using HHblits and HHmake from a single sequence FASTA file.
cif2fasta     
clean-a3m      clean-a3m will read in all sequences in a given A3M file and overwrite the the given file with all non-empty sequences.
fasta-count     
fasta-split     
fmap-to-bow     
hhfrag-map     
hhfrag-map-many     
mattbench-cluster     
msaconvert     
pdb-rmsd      pdb-rmsd computes the RMSD between two sets of carbon-alpha ATOM records read from PDB files.
pdb-test     
pdb2fasta     
pdbs-chains      Command pdbs-chains reads a file in the PDB Select format and outputs the list of PDB identifiers in the set.
random-pdbs     
slicehhm     
util     
viewmap