Package tools provides command line tools that utilize the various repositories in the github.com/TuftsBCB organization.
In most cases, command line tools are typically very small and only representative of an interface to interact with an existing library. In more exceptional circumstances where performance is needed, a command line tool may use concurrency in an attempt to decrease execution time.
|bestfrag||bestfrag computes the best structural FragBag fragment that corresponds to the region provided.|
|buildhhm||Example buildhhm shows how to construct an HHM using HHblits and HHmake from a single sequence FASTA file.|
|clean-a3m||clean-a3m will read in all sequences in a given A3M file and overwrite the the given file with all non-empty sequences.|
|pdb-rmsd||pdb-rmsd computes the RMSD between two sets of carbon-alpha ATOM records read from PDB files.|
|pdbs-chains||Command pdbs-chains reads a file in the PDB Select format and outputs the list of PDB identifiers in the set.|